micca-sff2fastqΒΆ

Converts sff files to fastq (with Sanger 33 quality scores).

$ micca-sff2fastq --help
usage: micca-sff2fastq [-h] [-v] [-t] [-o DIR] input [input ...]

micca-sff2fastq converts sff files to fastq (with Sanger 33 quality scores).

positional arguments:
  input                 input sff file(s)

optional arguments:
  -h, --help            show this help message and exit
  -v, --version         show program's version number and exit
  -t, --trim            extract trimmed data
  -o DIR, --output-dir DIR
                        output directory (default fastq)

Example:

 $ micca-sff2fastq sample1.sff sample2.sff -o fastq_files

micca v. 0.1.
Author: Davide Albanese <davide.albanese@fmach.it>
Fondazione Edmund Mach, 2014.

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