CHANGES

Version 1.2.0

  • Hits output file option added to micca.api.msa.nast() (hits_fn option) and to the msa command (–nast-hits option);
  • Improved setup.py.

Version 1.1.0

  • strand option added in ‘classify’ (consensus-based classifier), ‘msa’ (NAST) and ‘otu’ (closed-reference and open reference OTU picking protolcols) commands. Now these commands search both strand (default) instead the plus strand only.

Version 1.0.0

  • micca includes:
  • VSEARCH v1.9.5
  • MUSCLE v3.8.31
  • FastTree v2.1.8